Just imported a FlowJo workspace for one of our users. This also affects Copy to Study: When I try to copy-to-study the analysis results, it uses the "bad" specimenIds found in the FlowJo workspace, not the corrected ones found in the FCSFiles table.ĭo I understand things correctly regarding how this should work? Why are the .* values showing up blank when I customize view of FCSAnalyses, but showing up fine when I customize view of FCSFiles? Is there any way to use the proper specimenId values during copy to study? It just seems to be the SpecimenId that does not show up. Note that when I customize view of FCSAnalyses to show .*, those show up fine, and have the values from the "corrected" file. This is why we prefer to use .* rather than .* - the former has been corrected, while the latter might not have been. However, the FCSFile used in the FlowJo workspace might be the version with the wrong specimenId. To fix this, we modify the keyword value in the FCSFile, and (re)import the FCSFile run.
![recover lost workspace after crash flowjo 10 recover lost workspace after crash flowjo 10](https://www.bdbiosciences.com/content/dam/bdb/products/software/flowjo/FlowJo-Workspace.jpg)
Sometimes the operator entered the wrong value as the keyword value for specimenId.
![recover lost workspace after crash flowjo 10 recover lost workspace after crash flowjo 10](http://v9docs.flowjo.com/html/images/wsedit1.jpg)
However, when I customize view of FCSAnalyses, and try to use .*, those all show up blank - even though they are properly resolved when I use SpecimenId.Specimen.* in the FCSFiles table. The latter is the same as what shows up in the FCSFiles table (same wellId in the URL). As I understand it, the "FCSFile" property refers to the info about the file found in the FlowJo workspace, while the "Original FCSFile" property refers to the originally imported FCS file. When I customize view of the resulting FCSAnalyses, there is an "FCSFile" property which itself has an "Original FCSFile" property. Now I import a FlowJo workspace, and have it resolve to existing FCS files - the ones I imported above. In Customize View, there is a SpecimenId property which has a Specimen property which has ParticipantId, SequenceNum properties, etc. When I import FCS files into a flow folder, I can then Customize View of FCSFiles table to show info about the Specimen (like ParticipantId, SequenceNum, DrawTimestamp, etc.) because I set the SpecimenId Column setting in the ICS Meta Data screen to by the appropriate keyword, and chose the appropriate target study during import. We use an FCS file keyword to hold the specimen id, and use a study specimen repo.
![recover lost workspace after crash flowjo 10 recover lost workspace after crash flowjo 10](https://docs.flowjo.com/wp-content/uploads/sites/6/2013/03/Screen_Shot_2014-11-03_at_12_16_09_PM.png)
: Could not initialize class Īt .(FCSAnalyzer.java:138)Īt .(FCSAnalyzer.java:166)Īt .(FCSAnalyzer.java:177)Īt .(FCSAnalyzer.java:199)Īt .FlowAnalyzer.generateGraph(FlowAnalyzer.java:80)Īt .well.WellController$GenerateGraphAction.getView(WellController.java:358)Īt .well.WellController$GenerateGraphAction.getView(WellController.java:349)Īt .SimpleViewAction.handleRequest(SimpleViewAction.java:58)Īt .BaseViewAction.handleRequestInternal(BaseViewAction.java:177)Īt .(AbstractController.java:153)Īt .SpringActionController.handleRequest(SpringActionController.java:354)Īt .DefaultModule.dispatch(DefaultModule.java:989)Īt .rvice(ViewServlet.java:165)Īt .service(HttpServlet.java:723)Īt .ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)Īt .ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)Īt .TransactionFilter.doFilter(TransactionFilter.java:36)Īt .ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)Īt .SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:118)Īt .ModuleLoader.doFilter(ModuleLoader.java:800)Īt .AuthFilter.doFilter(AuthFilter.java:171)Īt .StandardWrapperValve.invoke(StandardWrapperValve.java:233)Īt .StandardContextValve.invoke(StandardContextValve.java:191)Īt .StandardHostValve.invoke(StandardHostValve.java:127)Īt .ErrorReportValve.invoke(ErrorReportValve.java:103)Īt .StandardEngineValve.invoke(StandardEngineValve.java:109)Īt .rvice(CoyoteAdapter.java:293)Īt 11.Http11Processor.process(Http11Processor.java:861)Īt 11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:606)Īt .net.JIoEndpoint$n(JIoEndpoint.java:489) The complete error message is shown below.ĮRROR WellController 10:32:51,576 http-8080-6 : Error generating graph I am having problems generating graphs from a page that starts like thisįlow Experiment Runs > 96 WellBatch0 - PanSurf1-4 >įCS File 'Panel L1_C1-L1_110191_PBMC_10182011_C01.fcs' (I think I just sent an empty message arggg)